J5_9HYM_003
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9HYM|1|b|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9HYM_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1219
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9HYM|1|b|C|584
9HYM|1|b|G|585
9HYM|1|b|A|586
9HYM|1|b|C|587
9HYM|1|b|U|588
9HYM|1|b|U|589
*
9HYM|1|b|A|668
9HYM|1|b|G|669
9HYM|1|b|A|670
9HYM|1|b|C|671
*
9HYM|1|b|G|809
9HYM|1|b|U|810
9HYM|1|b|U|811
9HYM|1|b|C|812
*
9HYM|1|b|G|1195
9HYM|1|b|C|1196
*
9HYM|1|b|G|1250
9HYM|1|b|C|1251
9HYM|1|b|G|1252
9HYM|1|b|A|1253
9HYM|1|b|A|1254
9HYM|1|b|U|1255
9HYM|1|b|G|1256
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein bL35
- Chain e
- Large ribosomal subunit protein uL4
- Chain l
- Large ribosomal subunit protein uL15
- Chain q
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein bL21
Coloring options: