J5_9HYM_005
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 9HYM|1|b|A|2448, 9HYM|1|b|U|2449, 9HYM|1|b|U|2506, 9HYM|1|b|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HYM|1|b|G|2057
9HYM|1|b|A|2058
9HYM|1|b|A|2059
9HYM|1|b|A|2060
9HYM|1|b|G|2061
9HYM|1|b|A|2062
9HYM|1|b|C|2063
9HYM|1|b|C|2064
*
9HYM|1|b|G|2446
9HYM|1|b|G|2447
9HYM|1|b|A|2448
9HYM|1|b|U|2449
9HYM|1|b|A|2450
9HYM|1|b|A|2451
9HYM|1|b|C|2452
9HYM|1|b|A|2453
9HYM|1|b|G|2454
*
9HYM|1|b|C|2498
9HYM|1|b|C|2499
9HYM|1|b|U|2500
9HYM|1|b|C|2501
9HYM|1|b|G|2502
9HYM|1|b|A|2503
9HYM|1|b|U|2504
9HYM|1|b|G|2505
9HYM|1|b|U|2506
9HYM|1|b|C|2507
*
9HYM|1|b|G|2582
9HYM|1|b|G|2583
9HYM|1|b|U|2584
9HYM|1|b|U|2585
9HYM|1|b|U|2586
9HYM|1|b|A|2587
9HYM|1|b|G|2588
*
9HYM|1|b|C|2606
9HYM|1|b|G|2607
9HYM|1|b|G|2608
9HYM|1|b|U|2609
9HYM|1|b|C|2610
9HYM|1|b|C|2611
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain A
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- 50S ribosomal protein L3
- Chain e
- Large ribosomal subunit protein uL4
- Chain l
- Large ribosomal subunit protein uL15
- Chain m
- 50S ribosomal protein L16
- Chain s
- Large ribosomal subunit protein uL22
- Chain v
- Transfer RNA; tRNA
- Chain y
- Large ribosomal subunit protein bL27
- Chain z
- Gelation factor
Coloring options: