J5_9I14_003

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG(OMG)*CCAC

Length

27 nucleotides

Bulged bases

9I14|1|L5|G|3620, 9I14|1|L5|G|3625

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|G|2855
9I14|1|L5|C|2856
9I14|1|L5|A|2857
9I14|1|L5|A|2858
9I14|1|L5|G|2859
9I14|1|L5|C|2860
9I14|1|L5|OMC|2861
9I14|1|L5|G|2862
9I14|1|L5|G|2863
*
9I14|1|L5|U|2887
9I14|1|L5|G|2888
*
9I14|1|L5|U|3613
9I14|1|L5|G|3614
*
9I14|1|L5|C|3618
9I14|1|L5|G|3619
9I14|1|L5|G|3620
9I14|1|L5|A|3621
9I14|1|L5|C|3622
9I14|1|L5|C|3623
9I14|1|L5|A|3624
9I14|1|L5|G|3625
9I14|1|L5|G|3626
9I14|1|L5|OMG|3627
*
9I14|1|L5|C|3834
9I14|1|L5|C|3835
9I14|1|L5|A|3836
9I14|1|L5|C|3837

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA