J5_9I14_004

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

9I14|1|L5|A|3908, 9I14|1|L5|A|4394, 9I14|1|L5|G|4451, 9I14|1|L5|U|4555, 9I14|1|L5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|A|3903
9I14|1|L5|G|3904
9I14|1|L5|A|3905
9I14|1|L5|A|3906
9I14|1|L5|G|3907
9I14|1|L5|A|3908
9I14|1|L5|C|3909
9I14|1|L5|C|3910
*
9I14|1|L5|G|4392
9I14|1|L5|G|4393
9I14|1|L5|A|4394
9I14|1|L5|U|4395
9I14|1|L5|A|4396
9I14|1|L5|A|4397
9I14|1|L5|C|4398
9I14|1|L5|U|4399
9I14|1|L5|G|4400
*
9I14|1|L5|C|4444
9I14|1|L5|U|4445
9I14|1|L5|U|4446
9I14|1|L5|C|4447
9I14|1|L5|G|4448
9I14|1|L5|A|4449
9I14|1|L5|U|4450
9I14|1|L5|G|4451
9I14|1|L5|U|4452
9I14|1|L5|C|4453
*
9I14|1|L5|G|4528
9I14|1|L5|G|4529
9I14|1|L5|U|4530
9I14|1|L5|U|4531
9I14|1|L5|U|4532
9I14|1|L5|A|4533
9I14|1|L5|G|4534
*
9I14|1|L5|U|4552
9I14|1|L5|A|4553
9I14|1|L5|G|4554
9I14|1|L5|U|4555
9I14|1|L5|U|4556
9I14|1|L5|U|4557

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

60S ribosomal protein L3

Chain LC

60S ribosomal protein L4

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29