J5_9I14_008
3D structure
- PDB id
- 9I14 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GUCGCUC*GGG*UGCAUU*ACCUCGGGCCG*CGACC
- Length
- 32 nucleotides
- Bulged bases
- 9I14|1|S2|G|126, 9I14|1|S2|C|127, 9I14|1|S2|U|305, 9I14|1|S2|G|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I14|1|S2|G|123
9I14|1|S2|U|124
9I14|1|S2|C|125
9I14|1|S2|G|126
9I14|1|S2|C|127
9I14|1|S2|U|128
9I14|1|S2|C|129
*
9I14|1|S2|G|183
9I14|1|S2|G|184
9I14|1|S2|G|185
*
9I14|1|S2|U|214
9I14|1|S2|G|215
9I14|1|S2|C|216
9I14|1|S2|A|217
9I14|1|S2|U|218
9I14|1|S2|U|219
*
9I14|1|S2|A|302
9I14|1|S2|C|303
9I14|1|S2|C|304
9I14|1|S2|U|305
9I14|1|S2|C|306
9I14|1|S2|G|307
9I14|1|S2|G|308
9I14|1|S2|G|309
9I14|1|S2|C|310
9I14|1|S2|C|311
9I14|1|S2|G|312
*
9I14|1|S2|C|337
9I14|1|S2|G|338
9I14|1|S2|A|339
9I14|1|S2|C|340
9I14|1|S2|C|341
Current chains
- Chain S2
- SSU 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: