J5_9I2D_008

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9I2D|1|S2|G|126, 9I2D|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|S2|G|123
9I2D|1|S2|U|124
9I2D|1|S2|C|125
9I2D|1|S2|G|126
9I2D|1|S2|C|127
9I2D|1|S2|U|128
9I2D|1|S2|C|129
*
9I2D|1|S2|G|183
9I2D|1|S2|G|184
9I2D|1|S2|G|185
*
9I2D|1|S2|U|214
9I2D|1|S2|G|215
*
9I2D|1|S2|C|310
9I2D|1|S2|C|311
9I2D|1|S2|G|312
*
9I2D|1|S2|C|337
9I2D|1|S2|G|338
9I2D|1|S2|A|339
9I2D|1|S2|C|340
9I2D|1|S2|C|341

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8