J5_9I2E_004

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9I2E|1|L5|G|3620, 9I2E|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2E|1|L5|G|2855
9I2E|1|L5|C|2856
9I2E|1|L5|A|2857
9I2E|1|L5|A|2858
9I2E|1|L5|G|2859
9I2E|1|L5|C|2860
9I2E|1|L5|C|2861
9I2E|1|L5|G|2862
9I2E|1|L5|G|2863
*
9I2E|1|L5|U|2887
9I2E|1|L5|G|2888
*
9I2E|1|L5|U|3613
9I2E|1|L5|G|3614
*
9I2E|1|L5|C|3618
9I2E|1|L5|G|3619
9I2E|1|L5|G|3620
9I2E|1|L5|A|3621
9I2E|1|L5|C|3622
9I2E|1|L5|C|3623
9I2E|1|L5|A|3624
9I2E|1|L5|G|3625
9I2E|1|L5|G|3626
*
9I2E|1|L5|C|3835
9I2E|1|L5|A|3836
9I2E|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA