J5_9I2E_005

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUG*CG*CUU*AGGUAG*UGAAUG

Length

20 nucleotides

Bulged bases

9I2E|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2E|1|L5|C|3696
9I2E|1|L5|U|3697
9I2E|1|L5|G|3698
*
9I2E|1|L5|C|3752
9I2E|1|L5|G|3753
*
9I2E|1|L5|C|3771
9I2E|1|L5|U|3772
9I2E|1|L5|U|3773
*
9I2E|1|L5|A|3775
9I2E|1|L5|G|3776
9I2E|1|L5|G|3777
9I2E|1|L5|U|3778
9I2E|1|L5|A|3779
9I2E|1|L5|G|3780
*
9I2E|1|L5|U|3814
9I2E|1|L5|G|3815
9I2E|1|L5|A|3816
9I2E|1|L5|A|3817
9I2E|1|L5|U|3818
9I2E|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA