J5_9I2E_006

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU

Length

42 nucleotides

Bulged bases

9I2E|1|L5|A|3908, 9I2E|1|L5|A|4394, 9I2E|1|L5|G|4451, 9I2E|1|L5|U|4452, 9I2E|1|L5|U|4555, 9I2E|1|L5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2E|1|L5|A|3902
9I2E|1|L5|A|3903
9I2E|1|L5|G|3904
9I2E|1|L5|A|3905
9I2E|1|L5|A|3906
9I2E|1|L5|G|3907
9I2E|1|L5|A|3908
9I2E|1|L5|C|3909
9I2E|1|L5|C|3910
*
9I2E|1|L5|G|4392
9I2E|1|L5|G|4393
9I2E|1|L5|A|4394
9I2E|1|L5|U|4395
9I2E|1|L5|A|4396
9I2E|1|L5|A|4397
9I2E|1|L5|C|4398
9I2E|1|L5|U|4399
9I2E|1|L5|G|4400
*
9I2E|1|L5|C|4444
9I2E|1|L5|U|4445
9I2E|1|L5|U|4446
9I2E|1|L5|C|4447
9I2E|1|L5|G|4448
9I2E|1|L5|A|4449
9I2E|1|L5|U|4450
9I2E|1|L5|G|4451
9I2E|1|L5|U|4452
9I2E|1|L5|C|4453
*
9I2E|1|L5|G|4528
9I2E|1|L5|G|4529
9I2E|1|L5|U|4530
9I2E|1|L5|U|4531
9I2E|1|L5|U|4532
9I2E|1|L5|A|4533
9I2E|1|L5|G|4534
*
9I2E|1|L5|U|4552
9I2E|1|L5|A|4553
9I2E|1|L5|G|4554
9I2E|1|L5|U|4555
9I2E|1|L5|U|4556
9I2E|1|L5|U|4557
9I2E|1|L5|U|4558

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

60S ribosomal protein L3

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lb

60S ribosomal protein L29