J5_9I2E_010

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGCUC*GGGCG*CGUG*CCG*CG

Length

19 nucleotides

Bulged bases

9I2E|1|S2|G|126, 9I2E|1|S2|C|127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2E|1|S2|C|125
9I2E|1|S2|G|126
9I2E|1|S2|C|127
9I2E|1|S2|U|128
9I2E|1|S2|C|129
*
9I2E|1|S2|G|183
9I2E|1|S2|G|184
9I2E|1|S2|G|185
9I2E|1|S2|C|186
9I2E|1|S2|G|187
*
9I2E|1|S2|C|212
9I2E|1|S2|G|213
9I2E|1|S2|U|214
9I2E|1|S2|G|215
*
9I2E|1|S2|C|310
9I2E|1|S2|C|311
9I2E|1|S2|G|312
*
9I2E|1|S2|C|337
9I2E|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6