J5_9IOT_002

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

9IOT|1|A|A|532, 9IOT|1|A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|C|531
9IOT|1|A|A|532
9IOT|1|A|G|533
*
9IOT|1|A|C|560
9IOT|1|A|G|561
9IOT|1|A|U|562
9IOT|1|A|A|563
9IOT|1|A|C|564
*
9IOT|1|A|G|577
9IOT|1|A|G|578
9IOT|1|A|G|579
*
9IOT|1|A|C|1261
9IOT|1|A|A|1262
*
9IOT|1|A|U|2017
9IOT|1|A|G|2018

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain F

50S ribosomal protein L4

Chain S

Large ribosomal subunit protein bL20

Chain T

50S ribosomal protein L21

Chain U

50S ribosomal protein L22