J5_9IOT_004
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9IOT|1|A|U|1758, 9IOT|1|A|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9IOT|1|A|G|1674
9IOT|1|A|C|1675
9IOT|1|A|A|1676
9IOT|1|A|A|1677
9IOT|1|A|A|1678
9IOT|1|A|A|1679
9IOT|1|A|U|1680
9IOT|1|A|G|1681
9IOT|1|A|G|1682
*
9IOT|1|A|C|1706
9IOT|1|A|G|1707
*
9IOT|1|A|U|1751
9IOT|1|A|C|1752
*
9IOT|1|A|G|1756
9IOT|1|A|A|1757
9IOT|1|A|U|1758
9IOT|1|A|A|1759
9IOT|1|A|C|1760
9IOT|1|A|C|1761
9IOT|1|A|A|1762
9IOT|1|A|G|1763
9IOT|1|A|C|1764
*
9IOT|1|A|G|1988
9IOT|1|A|G|1989
9IOT|1|A|C|1990
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L14
- Chain R
- Large ribosomal subunit protein bL19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: