J5_9IOT_005
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 9IOT|1|A|A|2062, 9IOT|1|A|A|2448, 9IOT|1|A|H2U|2449, 9IOT|1|A|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9IOT|1|A|G|2057
9IOT|1|A|A|2058
9IOT|1|A|A|2059
9IOT|1|A|A|2060
9IOT|1|A|G|2061
9IOT|1|A|A|2062
9IOT|1|A|C|2063
9IOT|1|A|C|2064
*
9IOT|1|A|G|2446
9IOT|1|A|G|2447
9IOT|1|A|A|2448
9IOT|1|A|H2U|2449
9IOT|1|A|A|2450
9IOT|1|A|A|2451
9IOT|1|A|C|2452
9IOT|1|A|A|2453
*
9IOT|1|A|U|2500
9IOT|1|A|C|2501
9IOT|1|A|G|2502
9IOT|1|A|2MA|2503
9IOT|1|A|PSU|2504
9IOT|1|A|G|2505
9IOT|1|A|U|2506
*
9IOT|1|A|G|2583
9IOT|1|A|U|2584
9IOT|1|A|U|2585
9IOT|1|A|U|2586
9IOT|1|A|A|2587
9IOT|1|A|G|2588
*
9IOT|1|A|C|2606
9IOT|1|A|G|2607
9IOT|1|A|G|2608
9IOT|1|A|U|2609
9IOT|1|A|C|2610
9IOT|1|A|C|2611
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL2
- Chain E
- 50S ribosomal protein L3
- Chain F
- 50S ribosomal protein L4
- Chain N
- Large ribosomal subunit protein uL15
- Chain U
- 50S ribosomal protein L22
Coloring options: