J5_9IOT_007

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|a|C|36
9IOT|1|a|U|37
9IOT|1|a|G|38
9IOT|1|a|G|39
*
9IOT|1|a|C|403
9IOT|1|a|G|404
9IOT|1|a|U|405
9IOT|1|a|G|406
*
9IOT|1|a|C|436
9IOT|1|a|U|437
9IOT|1|a|U|438
9IOT|1|a|U|439
9IOT|1|a|C|440
*
9IOT|1|a|G|497
9IOT|1|a|A|498
9IOT|1|a|A|499
9IOT|1|a|G|500
*
9IOT|1|a|C|545
9IOT|1|a|A|546
9IOT|1|a|A|547
9IOT|1|a|G|548

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12