J5_9IOT_009
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9IOT|1|a|A|109, 9IOT|1|a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9IOT_009 not in the Motif Atlas
- Homologous match to J5_8B0X_003
- Geometric discrepancy: 0.0353
- The information below is about J5_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.3
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9IOT|1|a|C|58
9IOT|1|a|A|59
9IOT|1|a|A|60
9IOT|1|a|G|61
*
9IOT|1|a|C|106
9IOT|1|a|G|107
9IOT|1|a|G|108
9IOT|1|a|A|109
9IOT|1|a|C|110
9IOT|1|a|G|111
9IOT|1|a|G|112
9IOT|1|a|G|113
*
9IOT|1|a|C|314
9IOT|1|a|A|315
9IOT|1|a|C|316
*
9IOT|1|a|G|337
9IOT|1|a|A|338
9IOT|1|a|C|339
*
9IOT|1|a|G|350
9IOT|1|a|G|351
9IOT|1|a|C|352
9IOT|1|a|A|353
9IOT|1|a|G|354
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L14
- Chain p
- Small ribosomal subunit protein bS16
- Chain t
- Small ribosomal subunit protein bS20
Coloring options: