J5_9J1M_003
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGAGUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9J1M|1|A|U|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9J1M_003 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1117
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|A|C|686
9J1M|1|A|G|687
9J1M|1|A|A|688
9J1M|1|A|G|689
9J1M|1|A|U|690
9J1M|1|A|C|691
*
9J1M|1|A|G|797
9J1M|1|A|G|798
9J1M|1|A|A|799
9J1M|1|A|C|800
*
9J1M|1|A|G|938
9J1M|1|A|U|939
9J1M|1|A|U|940
9J1M|1|A|C|941
*
9J1M|1|A|G|1327
9J1M|1|A|C|1328
*
9J1M|1|A|G|1381
9J1M|1|A|A|1382
9J1M|1|A|G|1383
9J1M|1|A|A|1384
9J1M|1|A|A|1385
9J1M|1|A|U|1386
9J1M|1|A|G|1387
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain E
- Large ribosomal subunit protein uL4
- Chain L
- Large ribosomal subunit protein uL15
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein bL21
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