J5_9J1M_009
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAC*GAGAAGAAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9J1M_009 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.1346
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9J1M|1|a|C|39
9J1M|1|a|U|40
9J1M|1|a|G|41
9J1M|1|a|G|42
*
9J1M|1|a|C|402
9J1M|1|a|G|403
9J1M|1|a|U|404
9J1M|1|a|G|405
*
9J1M|1|a|C|435
9J1M|1|a|U|436
9J1M|1|a|U|437
9J1M|1|a|U|438
9J1M|1|a|C|439
9J1M|1|a|A|440
9J1M|1|a|C|441
*
9J1M|1|a|G|483
9J1M|1|a|A|484
9J1M|1|a|G|485
9J1M|1|a|A|486
9J1M|1|a|A|487
9J1M|1|a|G|488
9J1M|1|a|A|489
9J1M|1|a|A|490
9J1M|1|a|G|491
*
9J1M|1|a|C|536
9J1M|1|a|G|537
9J1M|1|a|A|538
9J1M|1|a|G|539
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: