J5_9J5P_001

3D structure

PDB id

9J5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of B. subtilis CspR complexed with sinefungin and cellularly expressed tRNA Leu

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GUGG*CAC*GCG*CGUG*CC

Length

16 nucleotides

Bulged bases

9J5P|1|A|U|8, 9J5P|1|A|G|9, 9J5P|1|A|U|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_97113.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9J5P|1|A|G|7
9J5P|1|A|U|8
9J5P|1|A|G|9
9J5P|1|A|G|10
*
9J5P|1|A|C|26
9J5P|1|A|A|27
9J5P|1|A|C|28
*
9J5P|1|A|G|44
9J5P|1|A|C|45
9J5P|1|A|G|46
*
9J5P|1|A|C|59
9J5P|1|A|G|60
9J5P|1|A|U|61
9J5P|1|A|G|62
*
9J5P|1|A|C|78
9J5P|1|A|C|79

Current chains

Chain A

tRNA Leu (89-MER)

Nearby chains

Chain B

Putative tRNA (cytidine(34)-2'-O)-methyltransferase