J5_9JPO_001

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPO|1|A|C|36
9JPO|1|A|U|37
9JPO|1|A|G|38
9JPO|1|A|G|39
*
9JPO|1|A|C|403
9JPO|1|A|G|404
9JPO|1|A|U|405
9JPO|1|A|G|406
*
9JPO|1|A|C|436
9JPO|1|A|U|437
9JPO|1|A|U|438
9JPO|1|A|U|439
9JPO|1|A|C|440
*
9JPO|1|A|G|497
9JPO|1|A|A|498
9JPO|1|A|A|499
9JPO|1|A|G|500
*
9JPO|1|A|C|545
9JPO|1|A|A|546
9JPO|1|A|A|547
9JPO|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12