J5_9K0Z_004

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

9K0Z|1|h|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K0Z|1|h|C|44
9K0Z|1|h|G|45
9K0Z|1|h|A|46
9K0Z|1|h|U|47
9K0Z|1|h|G|48
9K0Z|1|h|A|49
9K0Z|1|h|A|50
9K0Z|1|h|G|51
*
9K0Z|1|h|C|113
9K0Z|1|h|G|114
9K0Z|1|h|A|115
9K0Z|1|h|A|116
9K0Z|1|h|U|117
9K0Z|1|h|G|118
*
9K0Z|1|h|C|127
9K0Z|1|h|G|128
*
9K0Z|1|h|C|147
9K0Z|1|h|A|148
9K0Z|1|h|C|149
*
9K0Z|1|h|G|175
9K0Z|1|h|G|176
9K0Z|1|h|G|177

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain d

Large ribosomal subunit protein bL34