J5_9K0Z_005

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9K0Z|1|h|U|318, 9K0Z|1|h|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K0Z|1|h|C|269
9K0Z|1|h|U|270
9K0Z|1|h|A|271
9K0Z|1|h|A|272
9K0Z|1|h|A|273
9K0Z|1|h|C|274
*
9K0Z|1|h|G|312
9K0Z|1|h|G|313
9K0Z|1|h|G|314
9K0Z|1|h|U|315
9K0Z|1|h|U|316
9K0Z|1|h|G|317
9K0Z|1|h|U|318
9K0Z|1|h|G|319
*
9K0Z|1|h|C|457
9K0Z|1|h|G|458
9K0Z|1|h|A|459
9K0Z|1|h|G|460
9K0Z|1|h|U|461
9K0Z|1|h|A|462
9K0Z|1|h|G|463
*
9K0Z|1|h|U|487
9K0Z|1|h|G|488
9K0Z|1|h|A|489
9K0Z|1|h|A|490
9K0Z|1|h|U|491
9K0Z|1|h|C|492
9K0Z|1|h|U|493
9K0Z|1|h|G|494
*
9K0Z|1|h|U|509
9K0Z|1|h|A|510
9K0Z|1|h|A|511
9K0Z|1|h|G|512

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein bL28

Chain n

50S ribosomal protein L9