J5_9K0Z_009

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

9K0Z|1|h|A|1975, 9K0Z|1|h|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K0Z|1|h|G|1892
9K0Z|1|h|C|1893
9K0Z|1|h|A|1894
9K0Z|1|h|A|1895
9K0Z|1|h|A|1896
9K0Z|1|h|A|1897
9K0Z|1|h|U|1898
9K0Z|1|h|G|1899
9K0Z|1|h|C|1900
*
9K0Z|1|h|G|1924
9K0Z|1|h|A|1925
*
9K0Z|1|h|U|1968
9K0Z|1|h|G|1969
*
9K0Z|1|h|C|1973
9K0Z|1|h|A|1974
9K0Z|1|h|A|1975
9K0Z|1|h|A|1976
9K0Z|1|h|C|1977
9K0Z|1|h|C|1978
9K0Z|1|h|A|1979
9K0Z|1|h|G|1980
9K0Z|1|h|U|1981
*
9K0Z|1|h|A|2212
9K0Z|1|h|A|2213
9K0Z|1|h|C|2214

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

Large ribosomal subunit protein uL3

Chain r

50S ribosomal protein L14

Chain w

50S ribosomal protein L19