J5_9K0Z_011
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9K0Z|1|h|C|2299, 9K0Z|1|h|G|2652, 9K0Z|1|h|G|2653, 9K0Z|1|h|A|2654, 9K0Z|1|h|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9K0Z|1|h|U|2297
9K0Z|1|h|U|2298
9K0Z|1|h|C|2299
9K0Z|1|h|A|2300
*
9K0Z|1|h|U|2467
9K0Z|1|h|U|2468
9K0Z|1|h|U|2469
9K0Z|1|h|A|2470
*
9K0Z|1|h|U|2482
9K0Z|1|h|G|2483
*
9K0Z|1|h|C|2505
9K0Z|1|h|G|2506
*
9K0Z|1|h|C|2651
9K0Z|1|h|G|2652
9K0Z|1|h|G|2653
9K0Z|1|h|A|2654
9K0Z|1|h|U|2655
9K0Z|1|h|A|2656
9K0Z|1|h|A|2657
9K0Z|1|h|A|2658
9K0Z|1|h|A|2659
Current chains
- Chain h
- 23S ribosomal RNA
Nearby chains
- Chain X
- Large ribosomal subunit protein bL27
- Chain Y
- Large ribosomal subunit protein bL28
- Chain c
- Large ribosomal subunit protein bL33A
- Chain e
- Large ribosomal subunit protein bL35
- Chain i
- Large ribosomal subunit protein uL2
- Chain s
- Large ribosomal subunit protein uL15
Coloring options: