J5_9K10_001

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

9K10|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K10|1|A|C|44
9K10|1|A|G|45
9K10|1|A|A|46
9K10|1|A|U|47
9K10|1|A|G|48
9K10|1|A|A|49
9K10|1|A|A|50
9K10|1|A|G|51
*
9K10|1|A|C|113
9K10|1|A|G|114
9K10|1|A|A|115
9K10|1|A|A|116
9K10|1|A|U|117
9K10|1|A|G|118
*
9K10|1|A|C|127
9K10|1|A|G|128
*
9K10|1|A|C|147
9K10|1|A|A|148
9K10|1|A|C|149
*
9K10|1|A|G|175
9K10|1|A|G|176
9K10|1|A|G|177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34