J5_9K10_005

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K10|1|A|C|694
9K10|1|A|G|695
9K10|1|A|A|696
9K10|1|A|G|697
*
9K10|1|A|C|718
9K10|1|A|G|719
9K10|1|A|C|720
9K10|1|A|A|721
9K10|1|A|G|722
*
9K10|1|A|C|729
9K10|1|A|G|730
9K10|1|A|A|731
9K10|1|A|G|732
*
9K10|1|A|C|744
9K10|1|A|G|745
9K10|1|A|U|746
9K10|1|A|A|747
9K10|1|A|U|748
9K10|1|A|C|749
*
9K10|1|A|G|766
9K10|1|A|U|767
9K10|1|A|G|768
9K10|1|A|U|769
9K10|1|A|A|770
9K10|1|A|G|771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35