J5_9KDT_001
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9KDT|1|L8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|L5|G|19
9KDT|1|L5|U|20
9KDT|1|L5|G|21
*
9KDT|1|L8|C|35
9KDT|1|L8|G|36
9KDT|1|L8|A|37
9KDT|1|L8|U|38
9KDT|1|L8|G|39
9KDT|1|L8|A|40
9KDT|1|L8|A|41
9KDT|1|L8|G|42
*
9KDT|1|L8|C|101
9KDT|1|L8|G|102
9KDT|1|L8|A|103
9KDT|1|L8|A|104
9KDT|1|L8|C|105
9KDT|1|L8|G|106
*
9KDT|1|L8|C|113
9KDT|1|L8|G|114
*
9KDT|1|L8|U|136
9KDT|1|L8|A|137
9KDT|1|L8|C|138
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lh
- Large ribosomal subunit protein uL29
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- Large ribosomal subunit protein eL39-like
Coloring options: