J5_9KDT_002
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 9KDT|1|L5|C|2046, 9KDT|1|L5|U|2107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|L5|G|1150
9KDT|1|L5|G|1151
9KDT|1|L5|A|1152
9KDT|1|L5|G|1153
9KDT|1|L5|U|1154
9KDT|1|L5|C|1155
*
9KDT|1|L5|G|1330
9KDT|1|L5|G|1331
9KDT|1|L5|A|1332
9KDT|1|L5|C|1333
*
9KDT|1|L5|G|1472
9KDT|1|L5|U|1473
9KDT|1|L5|U|1474
9KDT|1|L5|C|1475
*
9KDT|1|L5|G|2045
9KDT|1|L5|C|2046
9KDT|1|L5|C|2047
*
9KDT|1|L5|G|2102
9KDT|1|L5|C|2103
9KDT|1|L5|A|2104
9KDT|1|L5|G|2105
9KDT|1|L5|A|2106
9KDT|1|L5|U|2107
9KDT|1|L5|C|2108
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- Large ribosomal subunit protein eL15
- Chain La
- Large ribosomal subunit protein uL15
- Chain Le
- Large ribosomal subunit protein eL32
- Chain Lr
- Large ribosomal subunit protein eL28
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