J5_9KDT_005
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9KDT|1|L5|G|3579, 9KDT|1|L5|A|4029, 9KDT|1|L5|G|4030, 9KDT|1|L5|A|4031, 9KDT|1|L5|A|4032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|L5|U|3577
9KDT|1|L5|U|3578
9KDT|1|L5|G|3579
9KDT|1|L5|A|3580
*
9KDT|1|L5|U|3841
9KDT|1|L5|U|3842
9KDT|1|L5|U|3843
9KDT|1|L5|G|3844
*
9KDT|1|L5|C|3857
9KDT|1|L5|A|3858
*
9KDT|1|L5|U|3880
9KDT|1|L5|G|3881
*
9KDT|1|L5|C|4028
9KDT|1|L5|A|4029
9KDT|1|L5|G|4030
9KDT|1|L5|A|4031
9KDT|1|L5|A|4032
9KDT|1|L5|A|4033
9KDT|1|L5|A|4034
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LQ
- Large ribosomal subunit protein eL18
- Chain LT
- Large ribosomal subunit protein eL21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lo
- Large ribosomal subunit protein eL42
- Chain S6
- Transfer RNA; tRNA
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