Loop J5_9KDT

3D structure

PDB id: 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å

Loop

Sequence: CUUGU*AAAUAACA*UGGAAUGAGUCCA*UUAACGAGGAUCCAU*AUAG
Length: 45 nucleotides
Bulged bases: 9KDT|1|S2|C|568, 9KDT|1|S2|C|569, 9KDT|1|S2|G|590, 9KDT|1|S2|U|592, 9KDT|1|S2|C|593, 9KDT|1|S2|C|594
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9KDT|1|S2|C|30
9KDT|1|S2|U|31
9KDT|1|S2|U|32
9KDT|1|S2|G|33
9KDT|1|S2|U|34
*
9KDT|1|S2|A|522
9KDT|1|S2|A|523
9KDT|1|S2|A|524
9KDT|1|S2|U|525
9KDT|1|S2|A|526
9KDT|1|S2|A|527
9KDT|1|S2|C|528
9KDT|1|S2|A|529
*
9KDT|1|S2|U|558
9KDT|1|S2|G|559
9KDT|1|S2|G|560
9KDT|1|S2|A|561
9KDT|1|S2|A|562
9KDT|1|S2|U|563
9KDT|1|S2|G|564
9KDT|1|S2|A|565
9KDT|1|S2|G|566
9KDT|1|S2|U|567
9KDT|1|S2|C|568
9KDT|1|S2|C|569
9KDT|1|S2|A|570
*
9KDT|1|S2|U|582
9KDT|1|S2|U|583
9KDT|1|S2|A|584
9KDT|1|S2|A|585
9KDT|1|S2|C|586
9KDT|1|S2|G|587
9KDT|1|S2|A|588
9KDT|1|S2|G|589
9KDT|1|S2|G|590
9KDT|1|S2|A|591
9KDT|1|S2|U|592
9KDT|1|S2|C|593
9KDT|1|S2|C|594
9KDT|1|S2|A|595
9KDT|1|S2|U|596
*
9KDT|1|S2|A|642
9KDT|1|S2|U|643
9KDT|1|S2|A|644
9KDT|1|S2|G|645

Current chains

Chain S2: Mus musculus 18S ribosomal RNA

Nearby chains

Chain SJ: Small ribosomal subunit protein uS4
Chain SX: Small ribosomal subunit protein uS12
Chain SY: Small ribosomal subunit protein eS24
Chain Se: Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

J5_9KDT_006