J5_9KDU_003

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9KDU|1|L5|G|3277, 9KDU|1|L5|G|3282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|G|2609
9KDU|1|L5|C|2610
9KDU|1|L5|A|2611
9KDU|1|L5|A|2612
9KDU|1|L5|G|2613
9KDU|1|L5|C|2614
9KDU|1|L5|C|2615
9KDU|1|L5|G|2616
9KDU|1|L5|G|2617
*
9KDU|1|L5|U|2641
9KDU|1|L5|G|2642
*
9KDU|1|L5|U|3270
9KDU|1|L5|G|3271
*
9KDU|1|L5|C|3275
9KDU|1|L5|G|3276
9KDU|1|L5|G|3277
9KDU|1|L5|A|3278
9KDU|1|L5|C|3279
9KDU|1|L5|C|3280
9KDU|1|L5|A|3281
9KDU|1|L5|G|3282
9KDU|1|L5|G|3283
*
9KDU|1|L5|C|3492
9KDU|1|L5|A|3493
9KDU|1|L5|C|3494

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein eL19

Chain LV

Large ribosomal subunit protein uL14

Chain LW

Large ribosomal subunit protein eL24

Chain S2

Small subunit ribosomal RNA; SSU rRNA