J5_9KDU_004
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9KDU|1|L5|A|3565, 9KDU|1|L5|A|4047, 9KDU|1|L5|U|4103, 9KDU|1|L5|G|4104, 9KDU|1|L5|U|4208, 9KDU|1|L5|U|4209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|L5|A|3560
9KDU|1|L5|G|3561
9KDU|1|L5|A|3562
9KDU|1|L5|A|3563
9KDU|1|L5|G|3564
9KDU|1|L5|A|3565
9KDU|1|L5|C|3566
9KDU|1|L5|C|3567
*
9KDU|1|L5|G|4045
9KDU|1|L5|G|4046
9KDU|1|L5|A|4047
9KDU|1|L5|U|4048
9KDU|1|L5|A|4049
9KDU|1|L5|A|4050
9KDU|1|L5|C|4051
9KDU|1|L5|U|4052
9KDU|1|L5|G|4053
*
9KDU|1|L5|C|4097
9KDU|1|L5|U|4098
9KDU|1|L5|U|4099
9KDU|1|L5|C|4100
9KDU|1|L5|G|4101
9KDU|1|L5|A|4102
9KDU|1|L5|U|4103
9KDU|1|L5|G|4104
9KDU|1|L5|U|4105
9KDU|1|L5|C|4106
*
9KDU|1|L5|G|4181
9KDU|1|L5|G|4182
9KDU|1|L5|U|4183
9KDU|1|L5|U|4184
9KDU|1|L5|U|4185
9KDU|1|L5|A|4186
9KDU|1|L5|G|4187
*
9KDU|1|L5|U|4205
9KDU|1|L5|A|4206
9KDU|1|L5|G|4207
9KDU|1|L5|U|4208
9KDU|1|L5|U|4209
9KDU|1|L5|U|4210
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- Large ribosomal subunit protein uL4
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain S7
- Transfer RNA; tRNA
- Chain Z
- Nascent peptide
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