J5_9KDU_006
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUUGUCU*AAAAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 30 nucleotides
- Bulged bases
- 9KDU|1|S2|C|594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|C|30
9KDU|1|S2|U|31
9KDU|1|S2|U|32
9KDU|1|S2|G|33
9KDU|1|S2|U|34
9KDU|1|S2|C|35
9KDU|1|S2|U|36
*
9KDU|1|S2|A|520
9KDU|1|S2|A|521
9KDU|1|S2|A|522
9KDU|1|S2|A|523
9KDU|1|S2|A|524
9KDU|1|S2|U|525
9KDU|1|S2|A|526
9KDU|1|S2|A|527
9KDU|1|S2|C|528
*
9KDU|1|S2|G|559
9KDU|1|S2|G|560
9KDU|1|S2|A|561
9KDU|1|S2|A|562
9KDU|1|S2|U|563
9KDU|1|S2|G|564
*
9KDU|1|S2|C|593
9KDU|1|S2|C|594
9KDU|1|S2|A|595
9KDU|1|S2|U|596
*
9KDU|1|S2|A|642
9KDU|1|S2|U|643
9KDU|1|S2|A|644
9KDU|1|S2|G|645
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: