J5_9KKF_004

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9KKF|1|S2|G|126, 9KKF|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|G|123
9KKF|1|S2|U|124
9KKF|1|S2|C|125
9KKF|1|S2|G|126
9KKF|1|S2|C|127
9KKF|1|S2|U|128
9KKF|1|S2|C|129
*
9KKF|1|S2|G|183
9KKF|1|S2|G|184
9KKF|1|S2|G|185
*
9KKF|1|S2|U|214
9KKF|1|S2|G|215
*
9KKF|1|S2|C|310
9KKF|1|S2|C|311
9KKF|1|S2|G|312
*
9KKF|1|S2|C|337
9KKF|1|S2|G|338
9KKF|1|S2|A|339
9KKF|1|S2|C|340
9KKF|1|S2|C|341

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8