J5_9KMU_002

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|C|30
9KMU|1|2|U|31
9KMU|1|2|U|32
9KMU|1|2|G|33
9KMU|1|2|U|34
*
9KMU|1|2|A|521
9KMU|1|2|A|522
9KMU|1|2|A|523
9KMU|1|2|U|524
9KMU|1|2|A|525
9KMU|1|2|A|526
9KMU|1|2|C|527
*
9KMU|1|2|G|558
9KMU|1|2|G|559
9KMU|1|2|A|560
9KMU|1|2|A|561
9KMU|1|2|U|562
9KMU|1|2|G|563
9KMU|1|2|A|564
9KMU|1|2|G|565
*
9KMU|1|2|C|585
9KMU|1|2|G|586
9KMU|1|2|A|587
9KMU|1|2|G|588
9KMU|1|2|G|589
9KMU|1|2|A|590
9KMU|1|2|U|591
9KMU|1|2|C|592
9KMU|1|2|C|593
9KMU|1|2|A|594
9KMU|1|2|U|595
*
9KMU|1|2|A|641
9KMU|1|2|U|642
9KMU|1|2|A|643
9KMU|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30