J5_9KMX_001

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUG*CCAU*AUAG

Length

30 nucleotides

Bulged bases

9KMX|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|C|30
9KMX|1|2|U|31
9KMX|1|2|U|32
9KMX|1|2|G|33
9KMX|1|2|U|34
9KMX|1|2|C|35
9KMX|1|2|U|36
*
9KMX|1|2|A|519
9KMX|1|2|A|520
9KMX|1|2|A|521
9KMX|1|2|A|522
9KMX|1|2|A|523
9KMX|1|2|U|524
9KMX|1|2|A|525
9KMX|1|2|A|526
9KMX|1|2|C|527
*
9KMX|1|2|G|558
9KMX|1|2|G|559
9KMX|1|2|A|560
9KMX|1|2|A|561
9KMX|1|2|U|562
9KMX|1|2|G|563
*
9KMX|1|2|C|592
9KMX|1|2|C|593
9KMX|1|2|A|594
9KMX|1|2|U|595
*
9KMX|1|2|A|641
9KMX|1|2|U|642
9KMX|1|2|A|643
9KMX|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30