J5_9KMX_003

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9KMX|1|2|U|55, 9KMX|1|2|A|92, 9KMX|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|C|53
9KMX|1|2|A|54
9KMX|1|2|U|55
9KMX|1|2|G|56
*
9KMX|1|2|C|89
9KMX|1|2|G|90
9KMX|1|2|A|91
9KMX|1|2|A|92
9KMX|1|2|U|93
9KMX|1|2|G|94
9KMX|1|2|G|95
9KMX|1|2|C|96
*
9KMX|1|2|G|434
9KMX|1|2|A|435
9KMX|1|2|G|436
*
9KMX|1|2|C|457
9KMX|1|2|A|458
9KMX|1|2|C|459
*
9KMX|1|2|G|470
9KMX|1|2|G|471
9KMX|1|2|C|472
9KMX|1|2|A|473
9KMX|1|2|G|474

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24