J5_9KMY_001

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

9KMY|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|C|30
9KMY|1|2|U|31
9KMY|1|2|U|32
9KMY|1|2|G|33
9KMY|1|2|U|34
*
9KMY|1|2|A|521
9KMY|1|2|A|522
9KMY|1|2|A|523
9KMY|1|2|U|524
9KMY|1|2|A|525
9KMY|1|2|A|526
9KMY|1|2|C|527
*
9KMY|1|2|G|558
9KMY|1|2|G|559
9KMY|1|2|A|560
9KMY|1|2|A|561
9KMY|1|2|U|562
9KMY|1|2|G|563
*
9KMY|1|2|C|592
9KMY|1|2|C|593
9KMY|1|2|A|594
9KMY|1|2|U|595
*
9KMY|1|2|A|641
9KMY|1|2|U|642
9KMY|1|2|A|643
9KMY|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30