J5_9KMY_004
3D structure
- PDB id
- 9KMY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGUGGAGCCUGCGGCUUAAUUUG*CGGGAAACCUCACCCGGCCCGGAC*GGGUGGUG*CCUUAGAUGUCCGGGGCUGCACGCGCGCUAC*GGAAUUC
- Length
- 94 nucleotides
- Bulged bases
- 9KMY|1|2|G|1256, 9KMY|1|2|G|1257, 9KMY|1|2|A|1258, 9KMY|1|2|A|1259, 9KMY|1|2|C|1262, 9KMY|1|2|U|1263, 9KMY|1|2|C|1264, 9KMY|1|2|G|1274, 9KMY|1|2|G|1275, 9KMY|1|2|G|1507, 9KMY|1|2|U|1509, 9KMY|1|2|C|1518, 9KMY|1|2|U|1519, 9KMY|1|2|A|1522
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMY|1|2|G|1222
9KMY|1|2|A|1223
9KMY|1|2|G|1224
9KMY|1|2|U|1225
9KMY|1|2|G|1226
9KMY|1|2|G|1227
9KMY|1|2|A|1228
9KMY|1|2|G|1229
9KMY|1|2|C|1230
9KMY|1|2|C|1231
9KMY|1|2|U|1232
9KMY|1|2|G|1233
9KMY|1|2|C|1234
9KMY|1|2|G|1235
9KMY|1|2|G|1236
9KMY|1|2|C|1237
9KMY|1|2|U|1238
9KMY|1|2|U|1239
9KMY|1|2|A|1240
9KMY|1|2|A|1241
9KMY|1|2|U|1242
9KMY|1|2|U|1243
9KMY|1|2|U|1244
9KMY|1|2|G|1245
*
9KMY|1|2|C|1254
9KMY|1|2|G|1255
9KMY|1|2|G|1256
9KMY|1|2|G|1257
9KMY|1|2|A|1258
9KMY|1|2|A|1259
9KMY|1|2|A|1260
9KMY|1|2|C|1261
9KMY|1|2|C|1262
9KMY|1|2|U|1263
9KMY|1|2|C|1264
9KMY|1|2|A|1265
9KMY|1|2|C|1266
9KMY|1|2|C|1267
9KMY|1|2|C|1268
9KMY|1|2|G|1269
9KMY|1|2|G|1270
9KMY|1|2|C|1271
9KMY|1|2|C|1272
9KMY|1|2|C|1273
9KMY|1|2|G|1274
9KMY|1|2|G|1275
9KMY|1|2|A|1276
9KMY|1|2|C|1277
*
9KMY|1|2|G|1320
9KMY|1|2|G|1321
9KMY|1|2|G|1322
9KMY|1|2|U|1323
9KMY|1|2|G|1324
9KMY|1|2|G|1325
9KMY|1|2|U|1326
9KMY|1|2|G|1327
*
9KMY|1|2|C|1502
9KMY|1|2|C|1503
9KMY|1|2|U|1504
9KMY|1|2|U|1505
9KMY|1|2|A|1506
9KMY|1|2|G|1507
9KMY|1|2|A|1508
9KMY|1|2|U|1509
9KMY|1|2|G|1510
9KMY|1|2|U|1511
9KMY|1|2|C|1512
9KMY|1|2|C|1513
9KMY|1|2|G|1514
9KMY|1|2|G|1515
9KMY|1|2|G|1516
9KMY|1|2|G|1517
9KMY|1|2|C|1518
9KMY|1|2|U|1519
9KMY|1|2|G|1520
9KMY|1|2|C|1521
9KMY|1|2|A|1522
9KMY|1|2|C|1523
9KMY|1|2|G|1524
9KMY|1|2|C|1525
9KMY|1|2|G|1526
9KMY|1|2|C|1527
9KMY|1|2|G|1528
9KMY|1|2|C|1529
9KMY|1|2|U|1530
9KMY|1|2|A|1531
9KMY|1|2|C|1532
*
9KMY|1|2|G|1638
9KMY|1|2|G|1639
9KMY|1|2|A|1640
9KMY|1|2|A|1641
9KMY|1|2|U|1642
9KMY|1|2|U|1643
9KMY|1|2|C|1644
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain K
- Small ribosomal subunit protein eS10
- Chain M
- Small ribosomal subunit protein eS12
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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