J5_9KMZ_004

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

9KMZ|1|2|G|126, 9KMZ|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|123
9KMZ|1|2|U|124
9KMZ|1|2|C|125
9KMZ|1|2|G|126
9KMZ|1|2|C|127
9KMZ|1|2|U|128
9KMZ|1|2|C|129
9KMZ|1|2|G|130
*
9KMZ|1|2|C|182
9KMZ|1|2|G|183
9KMZ|1|2|G|184
9KMZ|1|2|G|185
*
9KMZ|1|2|U|214
9KMZ|1|2|G|215
*
9KMZ|1|2|C|310
9KMZ|1|2|C|311
9KMZ|1|2|G|312
*
9KMZ|1|2|C|337
9KMZ|1|2|G|338
9KMZ|1|2|A|339
9KMZ|1|2|C|340
9KMZ|1|2|C|341

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8