J5_9KN0_002

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|C|30
9KN0|1|2|U|31
9KN0|1|2|U|32
9KN0|1|2|G|33
9KN0|1|2|U|34
*
9KN0|1|2|A|521
9KN0|1|2|A|522
9KN0|1|2|A|523
9KN0|1|2|U|524
9KN0|1|2|A|525
9KN0|1|2|A|526
9KN0|1|2|C|527
*
9KN0|1|2|G|558
9KN0|1|2|G|559
9KN0|1|2|A|560
9KN0|1|2|A|561
9KN0|1|2|U|562
9KN0|1|2|G|563
9KN0|1|2|A|564
9KN0|1|2|G|565
*
9KN0|1|2|C|585
9KN0|1|2|G|586
9KN0|1|2|A|587
9KN0|1|2|G|588
9KN0|1|2|G|589
9KN0|1|2|A|590
9KN0|1|2|U|591
9KN0|1|2|C|592
9KN0|1|2|C|593
9KN0|1|2|A|594
9KN0|1|2|U|595
*
9KN0|1|2|A|641
9KN0|1|2|U|642
9KN0|1|2|A|643
9KN0|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30