J5_9KN5_004

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9KN5|1|S2|G|126, 9KN5|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN5|1|S2|G|123
9KN5|1|S2|U|124
9KN5|1|S2|C|125
9KN5|1|S2|G|126
9KN5|1|S2|C|127
9KN5|1|S2|U|128
9KN5|1|S2|C|129
*
9KN5|1|S2|G|183
9KN5|1|S2|G|184
9KN5|1|S2|G|185
*
9KN5|1|S2|U|214
9KN5|1|S2|G|215
*
9KN5|1|S2|C|310
9KN5|1|S2|C|311
9KN5|1|S2|G|312
*
9KN5|1|S2|C|337
9KN5|1|S2|G|338
9KN5|1|S2|A|339
9KN5|1|S2|C|340
9KN5|1|S2|C|341

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8