J5_9KRP_001
3D structure
- PDB id
- 9KRP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 9KRP|1|S2|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KRP|1|S2|C|30
9KRP|1|S2|U|31
9KRP|1|S2|U|32
9KRP|1|S2|G|33
9KRP|1|S2|U|34
*
9KRP|1|S2|A|521
9KRP|1|S2|A|522
9KRP|1|S2|A|523
9KRP|1|S2|U|524
9KRP|1|S2|A|525
9KRP|1|S2|A|526
9KRP|1|S2|C|527
*
9KRP|1|S2|G|558
9KRP|1|S2|G|559
9KRP|1|S2|A|560
9KRP|1|S2|A|561
9KRP|1|S2|U|562
9KRP|1|S2|G|563
*
9KRP|1|S2|C|592
9KRP|1|S2|C|593
9KRP|1|S2|A|594
9KRP|1|S2|U|595
*
9KRP|1|S2|A|641
9KRP|1|S2|U|642
9KRP|1|S2|A|643
9KRP|1|S2|G|644
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain 5B
- Eukaryotic translation initiation factor 5B
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
Coloring options: