J5_9KZX_003

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9KZX|1|L5|G|3620, 9KZX|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|2855
9KZX|1|L5|C|2856
9KZX|1|L5|A|2857
9KZX|1|L5|A|2858
9KZX|1|L5|G|2859
9KZX|1|L5|C|2860
9KZX|1|L5|C|2861
9KZX|1|L5|G|2862
9KZX|1|L5|G|2863
*
9KZX|1|L5|U|2887
9KZX|1|L5|G|2888
*
9KZX|1|L5|U|3613
9KZX|1|L5|G|3614
*
9KZX|1|L5|C|3618
9KZX|1|L5|G|3619
9KZX|1|L5|G|3620
9KZX|1|L5|A|3621
9KZX|1|L5|C|3622
9KZX|1|L5|C|3623
9KZX|1|L5|A|3624
9KZX|1|L5|G|3625
9KZX|1|L5|G|3626
*
9KZX|1|L5|C|3835
9KZX|1|L5|A|3836
9KZX|1|L5|C|3837

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA