J5_9MDS_004

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGC*GA*UG*UAAG*CUA

Length

15 nucleotides

Bulged bases

9MDS|1|D|G|19, 9MDS|1|D|A|626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MDS|1|D|U|17
9MDS|1|D|A|18
9MDS|1|D|G|19
9MDS|1|D|C|20
*
9MDS|1|D|G|53
9MDS|1|D|A|54
*
9MDS|1|D|U|211
9MDS|1|D|G|212
*
9MDS|1|D|U|624
9MDS|1|D|A|625
9MDS|1|D|A|626
9MDS|1|D|G|627
*
9MDS|1|D|C|640
9MDS|1|D|U|641
9MDS|1|D|A|642

Current chains

Chain D

RNA (598-MER)

Nearby chains