J5_9MNC_001
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGAUGAAG*CGAACG*CG*UAC*GUG
- Length
- 22 nucleotides
- Bulged bases
- 9MNC|1|L1|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9MNC|1|L1|C|35
9MNC|1|L1|G|36
9MNC|1|L1|A|37
9MNC|1|L1|U|38
9MNC|1|L1|G|39
9MNC|1|L1|A|40
9MNC|1|L1|A|41
9MNC|1|L1|G|42
*
9MNC|1|L1|C|101
9MNC|1|L1|G|102
9MNC|1|L1|A|103
9MNC|1|L1|A|104
9MNC|1|L1|C|105
9MNC|1|L1|G|106
*
9MNC|1|L1|C|113
9MNC|1|L1|G|114
*
9MNC|1|L1|U|136
9MNC|1|L1|A|137
9MNC|1|L1|C|138
*
9MNC|1|L5|G|19
9MNC|1|L5|U|20
9MNC|1|L5|G|21
Current chains
- Chain L1
- 5.8S rRNA
- Chain L5
- 28S rRNA
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LO
- Large ribosomal subunit protein uL29
- Chain LP
- Large ribosomal subunit protein eL37
- Chain LU
- Large ribosomal subunit protein eL39
- Chain Ln
- Large ribosomal subunit protein uL23
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