J5_9MQ4_008

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9MQ4_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.073

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9MQ4|1|2|C|36
9MQ4|1|2|U|37
9MQ4|1|2|G|38
9MQ4|1|2|G|39
*
9MQ4|1|2|C|403
9MQ4|1|2|G|404
9MQ4|1|2|U|405
9MQ4|1|2|G|406
*
9MQ4|1|2|C|436
9MQ4|1|2|U|437
9MQ4|1|2|U|438
9MQ4|1|2|U|439
9MQ4|1|2|C|440
9MQ4|1|2|A|441
9MQ4|1|2|G|442
*
9MQ4|1|2|C|492
9MQ4|1|2|A|493
9MQ4|1|2|G|494
9MQ4|1|2|A|495
9MQ4|1|2|A|496
9MQ4|1|2|G|497
9MQ4|1|2|A|498
9MQ4|1|2|A|499
9MQ4|1|2|G|500
*
9MQ4|1|2|C|545
9MQ4|1|2|A|546
9MQ4|1|2|A|547
9MQ4|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12