J5_9MTP_003

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAG*CGUGC*GAG*CA*UG

Length

15 nucleotides

Bulged bases

9MTP|1|1A|A|532, 9MTP|1|1A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|1A|C|531
9MTP|1|1A|A|532
9MTP|1|1A|G|533
*
9MTP|1|1A|C|560
9MTP|1|1A|G|561
9MTP|1|1A|U|562
9MTP|1|1A|G|563
9MTP|1|1A|C|564
*
9MTP|1|1A|G|577
9MTP|1|1A|A|578
9MTP|1|1A|G|579
*
9MTP|1|1A|C|1261
9MTP|1|1A|A|1262
*
9MTP|1|1A|U|2017
9MTP|1|1A|G|2018

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21

Chain 1W

50S ribosomal protein L22