J5_9MTP_008

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|1a|C|36
9MTP|1|1a|U|37
9MTP|1|1a|G|38
9MTP|1|1a|G|39
*
9MTP|1|1a|C|403
9MTP|1|1a|U|404
9MTP|1|1a|U|405
9MTP|1|1a|G|406
*
9MTP|1|1a|C|436
9MTP|1|1a|U|437
9MTP|1|1a|G|438
9MTP|1|1a|A|439
9MTP|1|1a|A|441
9MTP|1|1a|C|442
*
9MTP|1|1a|G|492
9MTP|1|1a|G|493
9MTP|1|1a|U|494
9MTP|1|1a|A|495
9MTP|1|1a|A|496
9MTP|1|1a|U|498
9MTP|1|1a|A|499
9MTP|1|1a|G|500
*
9MTP|1|1a|C|545
9MTP|1|1a|G|546
9MTP|1|1a|A|547
9MTP|1|1a|G|548

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1l

30S ribosomal protein S12