J5_9MTP_011

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9MTP|1|2A|U|272|||A, 9MTP|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|2A|C|268
9MTP|1|2A|U|269
9MTP|1|2A|A|270
9MTP|1|2A|A|271
9MTP|1|2A|A|271|||A
9MTP|1|2A|C|271|||B
*
9MTP|1|2A|G|271|||V
9MTP|1|2A|G|271|||W
9MTP|1|2A|G|271|||X
9MTP|1|2A|U|271|||Y
9MTP|1|2A|C|271|||Z
9MTP|1|2A|G|272
9MTP|1|2A|U|272|||A
9MTP|1|2A|G|272|||B
*
9MTP|1|2A|C|366
9MTP|1|2A|G|370
9MTP|1|2A|A|371
9MTP|1|2A|G|372
9MTP|1|2A|U|373
9MTP|1|2A|A|374
9MTP|1|2A|C|375
*
9MTP|1|2A|G|399
9MTP|1|2A|G|400
9MTP|1|2A|A|401
9MTP|1|2A|A|402
9MTP|1|2A|U|403
9MTP|1|2A|C|404
9MTP|1|2A|U|405
9MTP|1|2A|G|406
*
9MTP|1|2A|U|421
9MTP|1|2A|A|422
9MTP|1|2A|A|423
9MTP|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9