Loop J5_9MTP

3D structure

PDB id: 9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 9MTP|1|2A|A|2448, 9MTP|1|2A|U|2449, 9MTP|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9MTP|1|2A|A|2057
9MTP|1|2A|A|2058
9MTP|1|2A|A|2059
9MTP|1|2A|A|2060
9MTP|1|2A|G|2061
9MTP|1|2A|A|2062
9MTP|1|2A|C|2063
9MTP|1|2A|C|2064
*
9MTP|1|2A|G|2446
9MTP|1|2A|G|2447
9MTP|1|2A|A|2448
9MTP|1|2A|U|2449
9MTP|1|2A|A|2450
9MTP|1|2A|A|2451
9MTP|1|2A|C|2452
9MTP|1|2A|A|2453
*
9MTP|1|2A|U|2500
9MTP|1|2A|C|2501
9MTP|1|2A|G|2502
9MTP|1|2A|2MA|2503
9MTP|1|2A|U|2504
9MTP|1|2A|G|2505
9MTP|1|2A|U|2506
9MTP|1|2A|C|2507
*
9MTP|1|2A|G|2582
9MTP|1|2A|G|2583
9MTP|1|2A|U|2584
9MTP|1|2A|U|2585
9MTP|1|2A|C|2586
9MTP|1|2A|A|2587
9MTP|1|2A|G|2588
*
9MTP|1|2A|C|2606
9MTP|1|2A|G|2607
9MTP|1|2A|G|2608
9MTP|1|2A|U|2609
9MTP|1|2A|C|2610
9MTP|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16
Chain 2w: Peptide chain release factor 1
Chain 2x: Transfer RNA; tRNA
Chain 2z: P-site Peptidyl-tRNA fMEAAAKC-tRNAcys Peptide-part

J5_9MTP_016